PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000182G0630
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 287aa    MW: 30322.3 Da    PI: 4.465
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000182G0630genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.73.8e-2085135155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      ++++GVr+++ +g+++AeIrd +     r  r++lg+f+taeeAa+ ++ a+ +l+g
  PH01000182G0630  85 TKFRGVRRRP-WGKYAAEIRDpW-----RgVRVWLGTFDTAEEAARVYDSAAIQLRG 135
                      69********.**********88.....55*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-1285135IPR001471AP2/ERF domain
CDDcd000187.02E-3085145No hitNo description
SuperFamilySSF541715.82E-2286145IPR016177DNA-binding domain
PROSITE profilePS5103223.10386143IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.5E-3086144IPR001471AP2/ERF domain
SMARTSM003801.8E-3686149IPR001471AP2/ERF domain
PRINTSPR003671.9E-108798IPR001471AP2/ERF domain
PRINTSPR003671.9E-10109125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MSRSRTVRIF WDDPDVTDSS SGEEGCGSRR VGRMTPPPLV QAGATAGAVL PEQCSAGDSD  60
RARRVVGCTG ARKRVAKGGS APPTTKFRGV RRRPWGKYAA EIRDPWRGVR VWLGTFDTAE  120
EAARVYDSAA IQLRGPSATT NFSTSANSAG TQDPVAAGYE SGSESSPAVS SPTSVLRKVP  180
SLASLAEDKD GSEANPGEPA TGCSLTVPEE LGEFVPFEDA PVYSSSSFWD FEPEAGFLYA  240
EPSSSEATWD ASAASAGAPW AAPVQENDYF QDLRDLFPLN QLPAIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A2e-1986148568ATERF1
2gcc_A2e-1986148568ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644464.11e-155PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
TrEMBLJ3L2I61e-155J3L2I6_ORYBR; Uncharacterized protein
STRINGOB01G34420.11e-154(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.23e-24cytokinin response factor 2